References

algorithms

summary
public	F ForceEdgeBundling(): *

components

summary
public	V RelGraph: *
public	V RelGraphModule: *
public	V StopPropagation: *
public	V WebGLSceneModule: *

components/gui

summary
public	V ExternalSelectDialog: *
public	V FieldEditor: *
public	V FieldEditorModule: *
public	V FieldEditorDialog: *
public	V LogInfoDialog: *
public	V LogInfoModule: *
public	V ResourceEditor: *
public	V ResourceEditorModule: *
public	V ResourceEditorDialog: *
public	V ResourceInfoModule: *
public	V ResourceInfoPanel: *
public	V ResourceSelectDialog: *
public	V SearchBar: *
public	V SearchBarModule: *
public	V ObjToArray: *

model

summary
public	C Coalescence Coalescence model
public	C Graph The main model graph (the group with configuration options for the model viewer)
public	C Group Group (subgraph) model
public	C Chain Chain model
public	C Channel Channel model
public	C GroupTemplate Group template
public	C Tree Tree model
public	C Logger
public	C External
public	C Resource The class defining common methods for all resources
public	C Border The class defining the border of a shape (lyph or region)
public	C Lyph Class that models lyphs
public	C Region Class that models regions
public	C Shape Class that specifies borders of lyphs and regions
public	C Link The class to visualize processes (edges)
public	C Material The class to model Material resources
public	C Node The class to visualize Node resources in the force-directed graphs
public	C VisualResource The class implementing common methods for the visual resources.
public	F addColor(resources: , defaultColor: ) Add color to the visual resources in the list that do not have color assigned yet
public	F findResourceByID(eArray: , e: ): * \| void \| T Finds a resource object in the parent group given an object or an ID
public	F getClassName(spec: ): Extracts class name from the schema definition
public	F getRefs(spec: ): Returns a list of references in the schema type specification
public	F isClassAbstract(clsName: *) Indicates whether schema class definition is abstract
public	F mergeGenResource(group: , parentGroup: , resource: , prop: ) Add a given resource to a given group and a parent group if it does not exist
public	F mergeGenResources(group: , parentGroup: , lnk,trg, lyph: *)
public	V COALESCENCE_TOPOLOGY: {"EMBEDDING": string, "CONNECTING": string}
public	V LEVEL: {"INFO": string, "WARN": string, "ERROR": string}
public	V STATUS: {"OK": string, "WARNING": string, "ERROR": string}
public	V logger: Logger
public	V modelClasses: {"Resource": , "VisualResource": , "GroupTemplate": , "Shape": , "External": , "Coalescence": , "Channel": , "Chain": , "Tree": , "Group": , "Graph": , "Node": , "Link": , "Material": , "Region": , "Lyph": , "Border": *}
public	V LYPH_TOPOLOGY: {"TUBE": string, "BAG": string, "BAG2": string, "CYST": string}
public	V JSONPath: JSONPath JSON Path validator
public	V schemaClassModels: {}
public	V LINK_GEOMETRY: {LINK: string, SEMICIRCLE: string, RECTANGLE: string, PATH: string, SPLINE: string, INVISIBLE: string, FORCE: string} Supported link geometries
public	V LINK_STROKE: {DASHED: string, THICK: string} Supported link strokes
public	V PROCESS_TYPE: {ADVECTIVE: string, DIFFUSIVE: string} Process types

services

summary
public	V GlobalErrorHandler: *
public	V LoggerService: *

test-app

summary
public	V TestApp: *
public	V TestAppModule: *

three

summary
public	C MaterialFactory The class to create materials with predefined default parameters
public	F align(link: {source: Vector3, target: Vector3}, obj: Object3D, reversed: boolean) Align an object along its axis (link)
public	F angle(v1: Vector3, v2: Vector3): number Compute the angle between two 3d vectors
public	F bezierSemicircle(startV: Vector3, endV: Vector3): CubicBezierCurve3 Create a cubic Bezier curve resembling a semicircle
public	F boundToPolygon(link: {source: Vector2, target: Vector2}, boundaryLinks: Array) Force link ends to stay inside of a polygon (reset coordinates to the intersection point)
public	F boundToRectangle(point: Vector2, min: {x: number, y: number}, max: {x: number, y: number}) Pushes a point inside of a rectangle on a plane
public	F colorStr2Hex(str: string): number Convert color string to hex
public	F commonTemplate(lyph1: , lyph2: ): * Determines whether two lyphs have a common supertype
public	F copyCoords(target: , source: ) Copy coordinates from source object to target
public	F createMeshWithBorder(shape: Shape, params: Object): Mesh Create a 3d object with border
public	F d3Layer(inner: , outer: , params: *): THREE.Mesh Draws layer of a lyph in 3d.
public	F d3Lyph(outer: , params: ): *
public	F direction(source: Vector3, target: Vector3): null Create a vector between two 3d points
public	F extractCoords(source: Object): Vector3 Create a vector from an object that contains coordinate fields x, y, and z
public	F geometryDifference(smallGeom: , largeGeom: , params: ): Computes difference between two geometries
public	F getBoundingBox(mesh: Mesh): Box3 Get bounding box for a mesh geometry
public	F getCenterOfMass(points: Array<Vector3>): Vector3 Return the center of mass given a set of control points
public	F getCenterPoint(mesh: Mesh): Vector3 Find coordinates of the central point of the given mesh
public	F getPoint(curve: , s: , t: , offset: ): * Get a point on a curve
public	F isInRange(from: , to: , angle: *): boolean Checks that the angle is between given angles
public	F layerShape(inner: Array, outer: Array): Shape Create lyph layer shape
public	F lyphShape(params: Array): Shape Create lyph shape
public	F mergedGeometry(tube: , cupTop: , cupBottom: , offset: ): Geometry \| SEA3D.Geometry \| * \| THREE.Geometry Helper function to produce a merged layer geometry given a tube shape and two cups representing open or closed borders
public	F rectangleCurve(startV: Vector3, endV: Vector3): CurvePath<Vector> \| CurvePath Create a curve path resembling a semi-rectangle with rounded corners
public	V THREE: *

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